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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_869403_869990_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
869403 - 869990
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTCAC
5'SS Class:
major
3'SS Sequence:
TTGTTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TATTACTGATCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.3
65
41.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.7
0.71
0.8
76.9
32
Minor 5ss
30.1
-2.3
2.7
33.4
35.3
Minor BPS
56.8
0.29
1.9
79.7
41.5

Associated Gene:

Gene:
RPAP2
Ensembl Gene ID:
ENSAPLG00000015165
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015834
834452 - 870115
35664