Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8721280_8723810_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8721280 - 8723810

Intron Length:

2531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TACCCTCGAGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTTAC

U12 Branch Point Sequence:

TTCCTCTTACCC

Flanking Amino Acid:

THRKSAWEEKPAERRRLISL

Intron Amino Acid Position:

383

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

69.2

0.48

37.1

Major PPT

62.9

0.29

58.7

36.6

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

61.9

0.35

1.6

71.01

40.5

Associated Gene:

Gene:

TEDC1

Ensembl Gene ID:

ENSAPLG00000014968

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015601

8720980 - 8772660

51681