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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8774987_8777784_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8774987 - 8777784
Intron Length:
2798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCACCATG
5'SS Class:
weak_major
3'SS Sequence:
GGGGGGTCTTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTAAGAT
U12 Branch Point Sequence:
TGCGCAGTAAGA
Flanking Amino Acid:
YAALFGPKGKPGRGGSKEHF
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.5
63.6
48.1
Major BPS
49.8
-0
1.3
49.1
44.8
Major PPT
57.6
0.17
1.1
50.5
48
Minor 5ss
44
-0.7
2.7
57.9
46.3
Minor BPS
40.7
-0.7
2.4
52.59
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014982
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015607
8774939 - 8780174
5236