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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8777848_8777949_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8777848 - 8777949
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAT
U12 Branch Point Sequence:
TCTCTCCCCACA
Flanking Amino Acid:
KTLTSGGHAEHDGKPYCNHP
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
58.4
0.21
1.4
51.1
46.3
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
42.6
-0.5
2.1
57.29
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014982
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015607
8774939 - 8780174
5236