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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8788629_8789008_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8788629 - 8789008
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGGGAT
U12 Branch Point Sequence:
TCCCCCTGCACA
Flanking Amino Acid:
PCYATLFGPKGVNIGGAGSY
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
41.6
-0.5
1.5
32.2
43.7
Major PPT
68.8
0.42
0.9
63.3
31.5
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
49.2
-0
2
61.44
44.5

Associated Gene:

Gene:
CRIP2
Ensembl Gene ID:
ENSAPLG00000015110
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033557
8787687 - 8792437
4751
ENSAPLT00000015765
8787687 - 8793628
5942