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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8789067_8790615_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8789067 - 8790615
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
AGCACCCTAACA
Flanking Amino Acid:
KTLTPGGHAEHDGKPFCHKP
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
74.1
0.54
0.8
65.3
36.2
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
55.8
0.18
1.8
64.52
41.2

Associated Gene:

Gene:
CRIP2
Ensembl Gene ID:
ENSAPLG00000015110
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033557
8787687 - 8792437
4751
ENSAPLT00000025005
8787687 - 8792593
4907
ENSAPLT00000015765
8787687 - 8793628
5942