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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8790711_8792391_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
8790711 - 8792391
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCCCCGAGC
5'SS Class:
weak_major
3'SS Sequence:
TGTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
AGTCGCTCACCC
Flanking Amino Acid:
SHCDKAERLSAEKVSSLGKD
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.3
52.5
41.1
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
76
0.58
0.8
70
30.9
Minor 5ss
22.3
-3.2
3.9
31.7
37
Minor BPS
43.7
-0.4
2.1
55.51
42.3

Associated Gene:

Gene:
CRIP2
Ensembl Gene ID:
ENSAPLG00000015110
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033557
8787687 - 8792437
4751