Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8809445_8812306_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8809445 - 8812306

Intron Length:

2862

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCACGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CAGTCCATAATT

Flanking Amino Acid:

LPNHGQTRQMGPSRNLLLNG

Intron Amino Acid Position:

599

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

73.1

31.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

65.5

0.35

1.1

63.5

42.8

Minor 5ss

29.9

-2.3

3.3

42.5

Minor BPS

62.3

0.47

1.7

73.99

Associated Gene:

Gene:

MTA1

Ensembl Gene ID:

ENSAPLG00000015316

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023104

8805641 - 8885298

79658

ENSAPLT00000016037

8805641 - 8885298

79658