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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8826801_8828457_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8826801 - 8828457
Intron Length:
1657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
ERPGPNRNNLSPHGVPVRNS
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.4
0.82
0.7
85.4
28
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
MTA1
Ensembl Gene ID:
ENSAPLG00000015316
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023104
8805641 - 8885298
79658
ENSAPLT00000016037
8805641 - 8885298
79658