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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8836451_8844563_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8836451 - 8844563
Intron Length:
8113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTCTAACT
Flanking Amino Acid:
WKTTDRYVQQKRLKAAEAES
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.7
0.76
0.9
85.8
26
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
64.5
0.53
1.7
84.97
35.2

Associated Gene:

Gene:
MTA1
Ensembl Gene ID:
ENSAPLG00000015316
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023104
8805641 - 8885298
79658
ENSAPLT00000016037
8805641 - 8885298
79658