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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8852623_8858242_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8852623 - 8858242
Intron Length:
5620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
ESLKSYLEREDFFFYSLVYD
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74.3
34.2
Major BPS
80
0.75
1
78.6
31
Major PPT
83.7
0.76
0.8
82.1
34.6
Minor 5ss
40.8
-1
2.8
53
43.8
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
MTA1
Ensembl Gene ID:
ENSAPLG00000015316
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023104
8805641 - 8885298
79658
ENSAPLT00000016037
8805641 - 8885298
79658