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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8858307_8858483_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8858307 - 8858483
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGGCC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATAAAAT
Flanking Amino Acid:
QLESLPATHIRGKCSVTLLN
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
69.1
37.5
Major BPS
100
1.24
0.5
100
0
Major PPT
88.5
0.87
0.6
88.4
21.3
Minor 5ss
30.6
-2.2
3.5
42.3
44.6
Minor BPS
62
0.45
2
86.72
38.6

Associated Gene:

Gene:
MTA1
Ensembl Gene ID:
ENSAPLG00000015316
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023104
8805641 - 8885298
79658
ENSAPLT00000016037
8805641 - 8885298
79658