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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8858611_8866225_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8858611 - 8866225
Intron Length:
7615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTCTCTATAACT
Flanking Amino Acid:
TLIVLADKHAREMEEEMENP
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
65.7
0.35
1
60.2
39.7
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
66.1
0.58
1.7
80.33
41.9

Associated Gene:

Gene:
MTA1
Ensembl Gene ID:
ENSAPLG00000015316
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023104
8805641 - 8885298
79658
ENSAPLT00000016037
8805641 - 8885298
79658