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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8892795_8893802_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8892795 - 8893802
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCCTTTTTAACC
Flanking Amino Acid:
TAKHQQNMLRVLIDGVEWND
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
41.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.8
0.58
0.7
69
24.8
Minor 5ss
32.6
-2
3.1
33.4
41.6
Minor BPS
72.6
0.69
1.2
72.92
38.9

Associated Gene:

Gene:
PACS2
Ensembl Gene ID:
ENSAPLG00000015577
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016298
8892676 - 8956940
64265
ENSAPLT00000042827
8892676 - 8936872
44197
ENSAPLT00000022068
8892676 - 8936872
44197