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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8895573_8898102_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8895573 - 8898102
Intron Length:
2530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AAATGATCATCT
Flanking Amino Acid:
PSVTGSFSSSSQSLGAELMG
Intron Amino Acid Position:
735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
68
0.45
1
57.8
39
Major PPT
83.9
0.76
0.8
76.9
37.3
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
40.8
-0.6
2.2
58.44
43.8

Associated Gene:

Gene:
PACS2
Ensembl Gene ID:
ENSAPLG00000015577
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042827
8892676 - 8936872
44197
ENSAPLT00000022068
8892676 - 8936872
44197
ENSAPLT00000016298
8892676 - 8956940
64265