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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8898239_8898867_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8898239 - 8898867
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAGC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAAAC
U12 Branch Point Sequence:
CAAACCCAGACA
Flanking Amino Acid:
GIVEQSSATSGDSDDAAPSS
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.9
41.1
Major BPS
46.8
-0.2
1.1
50.9
32
Major PPT
67.2
0.39
1.1
67.7
38
Minor 5ss
39.4
-1.2
2.9
52.8
43.9
Minor BPS
43
-0.5
2
49.63
40.9

Associated Gene:

Gene:
PACS2
Ensembl Gene ID:
ENSAPLG00000015577
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022068
8892676 - 8936872
44197
ENSAPLT00000016298
8892676 - 8956940
64265
ENSAPLT00000042827
8892676 - 8936872
44197