About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8914519_8915229_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8914519 - 8915229
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
CAATTATGAACA
Flanking Amino Acid:
FSTIVSRIQRYCNCNSQPPN
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.3
32.5
Major BPS
75.5
0.63
1
66
40.9
Major PPT
83.1
0.74
0.8
77.7
36.7
Minor 5ss
34.8
-1.7
3.2
45.1
38.2
Minor BPS
49.4
-0
1.7
59.47
39.6

Associated Gene:

Gene:
PACS2
Ensembl Gene ID:
ENSAPLG00000015577
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042827
8892676 - 8936872
44197
ENSAPLT00000022068
8892676 - 8936872
44197
ENSAPLT00000016298
8892676 - 8956940
64265