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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8915337_8916824_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8915337 - 8916824
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
AGGACTTTAACG
Flanking Amino Acid:
LVNTSDWQGQYLSDVLQKHT
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
79.7
0.67
0.8
77.3
31.4
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
61.9
0.24
1.4
59.31
42.4

Associated Gene:

Gene:
PACS2
Ensembl Gene ID:
ENSAPLG00000015577
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022068
8892676 - 8936872
44197
ENSAPLT00000016298
8892676 - 8956940
64265
ENSAPLT00000042827
8892676 - 8936872
44197