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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8927729_8929993_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8927729 - 8929993
Intron Length:
2265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGCTGCTTGATT
Flanking Amino Acid:
LAVGSINMAEVMQHPTEGGQ
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.6
0.62
0.9
69.5
41
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
60.3
0.4
1.8
75.43
41.9

Associated Gene:

Gene:
PACS2
Ensembl Gene ID:
ENSAPLG00000015577
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016298
8892676 - 8956940
64265
ENSAPLT00000042827
8892676 - 8936872
44197
ENSAPLT00000022068
8892676 - 8936872
44197