About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8930120_8933014_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8930120 - 8933014
Intron Length:
2895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTGG
5'SS Class:
major
3'SS Sequence:
TTTCCAACCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
TGTTTCCAACCT
Flanking Amino Acid:
TELALTFSLQYPHFLKREGN
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61.3
45.8
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
74.4
0.55
0.8
71.3
33.2
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
46.9
-0.1
2.2
72.75
44.1

Associated Gene:

Gene:
PACS2
Ensembl Gene ID:
ENSAPLG00000015577
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042827
8892676 - 8936872
44197
ENSAPLT00000022068
8892676 - 8936872
44197
ENSAPLT00000016298
8892676 - 8956940
64265