Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8933105_8936533_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8933105 - 8936533

Intron Length:

3429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCTGTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTCAC

U12 Branch Point Sequence:

ACCACGTGGACT

Flanking Amino Acid:

ISVVIAVKMQGSKRILRSHE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

80.7

31.6

Major BPS

64.5

0.36

1.2

69.3

37.7

Major PPT

81.5

0.71

0.9

77.1

37.1

Minor 5ss

35.4

-1.7

3.2

50.9

45.5

Minor BPS

43.9

-0.4

2.2

58.63

44.5

Associated Gene:

Gene:

PACS2

Ensembl Gene ID:

ENSAPLG00000015577

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022068

8892676 - 8936872

44197

ENSAPLT00000016298

8892676 - 8956940

64265

ENSAPLT00000042827

8892676 - 8936872

44197