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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8957383_8957531_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8957383 - 8957531
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGTTC
5'SS Class:
major
3'SS Sequence:
TCTCCCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
TGGTCCTCAGCC
Flanking Amino Acid:
LAASMQEDEQSGRDLQQYQS
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70
37.3
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
78.2
0.63
0.7
72.8
25.2
Minor 5ss
34.5
-1.8
3.6
48.7
47.8
Minor BPS
56.7
0.19
1.8
67.79
43.4

Associated Gene:

Gene:
SEC22B
Ensembl Gene ID:
ENSAPLG00000015847
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016527
8957308 - 8962469
5162