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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8957642_8960892_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8957642 - 8960892
Intron Length:
3251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GTGCTTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAG
U12 Branch Point Sequence:
ACTTGCTTAGTT
Flanking Amino Acid:
CTLEAGAMAFHYIIEKGVCY
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
52.3
0.06
1.6
51.4
46
Major PPT
69.9
0.45
0.9
62
39.9
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
55.4
0.25
2
73.92
43.5

Associated Gene:

Gene:
SEC22B
Ensembl Gene ID:
ENSAPLG00000015847
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016527
8957308 - 8962469
5162