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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8961054_8961838_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8961054 - 8961838
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGTCC
5'SS Class:
major
3'SS Sequence:
TCTCTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTCCCTCTGACG
Flanking Amino Acid:
VSRPYSFIEFDTYIQKTKKL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.3
35
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
83.9
0.76
0.8
76.2
37.8
Minor 5ss
32.7
-2
3.2
39.1
40.7
Minor BPS
50.9
-0.1
1.8
60.77
41.3

Associated Gene:

Gene:
SEC22B
Ensembl Gene ID:
ENSAPLG00000015847
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016527
8957308 - 8962469
5162