About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_898042_898130_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
898042 - 898130
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAC
U12 Branch Point Sequence:
CTAGCCTGACCC
Flanking Amino Acid:
GSYKCVKCSKVFSTPHGLEV
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73
34.7
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
80.6
0.69
0.7
77.3
24.7
Minor 5ss
32.1
-2
3.3
43.2
44.2
Minor BPS
48.7
-0.1
1.9
59.79
45.1

Associated Gene:

Gene:
GFI1
Ensembl Gene ID:
ENSAPLG00000015700
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016362
893863 - 903660
9798