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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8991200_8991886_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8991200 - 8991886
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGTTC
5'SS Class:
major
3'SS Sequence:
CTTGATCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATGCCTTGATC
Flanking Amino Acid:
YKCVCPSGYTGKDCQWIDAC
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70
37.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.8
0.6
0.9
69.2
36.8
Minor 5ss
34.5
-1.8
3.6
48.7
47.8
Minor BPS
70.2
0.62
1.3
74.36
36.8

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030944
8990224 - 9025789
35566
ENSAPLT00000024024
8987266 - 9054638
67373
ENSAPLT00000016640
8988171 - 9054638
66468