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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8992223_8998285_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8992223 - 8998285
Intron Length:
6063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
CCTGTTTCACCC
Flanking Amino Acid:
DFTFECNCLPGFEGSICERN
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
73
0.52
1
65.1
45.5
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
43.3
-0.5
1.8
48.67
42.4

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016640
8988171 - 9054638
66468
ENSAPLT00000030944
8990224 - 9025789
35566
ENSAPLT00000024024
8987266 - 9054638
67373