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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_8998409_9012484_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8998409 - 9012484
Intron Length:
14076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTATTAAACT
Flanking Amino Acid:
YNCRCPPQWTGQFCTEDVDE
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.6
33
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.7
0.62
0.9
77.5
35.5
Minor 5ss
37.3
-1.4
3
52.4
44.2
Minor BPS
67.5
0.63
1.8
88.66
36.3

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030944
8990224 - 9025789
35566
ENSAPLT00000024024
8987266 - 9054638
67373
ENSAPLT00000016640
8988171 - 9054638
66468