Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9012719_9013542_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9012719 - 9013542

Intron Length:

824

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGATG

5'SS Class:

strong_major

3'SS Sequence:

TCTGCCTCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

GTTTTTTGAATG

Flanking Amino Acid:

FSCICPEGKAGLLCHLDDAC

Intron Amino Acid Position:

322

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.8

78.6

37.3

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

74.7

0.56

0.8

66.2

35.8

Minor 5ss

30.4

-2.2

3.2

38.7

46.6

Minor BPS

60.3

0.19

1.5

64.29

38.1

Associated Gene:

Gene:

NOTCH2

Ensembl Gene ID:

ENSAPLG00000015861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016640

8988171 - 9054638

66468

ENSAPLT00000030944

8990224 - 9025789

35566

ENSAPLT00000024024

8987266 - 9054638

67373