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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9013703_9014847_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9013703 - 9014847
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTTCCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTGCAGCAAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
ACGCACTTATCT
Flanking Amino Acid:
TEDVDECAMGNNPCEHAGKC
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.3
64.8
42
Major BPS
71.3
0.53
1
61.3
37
Major PPT
53.6
0.08
1
48.2
39.3
Minor 5ss
48.7
-0.1
2.8
68.2
36.6
Minor BPS
49.4
0.03
1.8
64.87
45.1

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024024
8987266 - 9054638
67373