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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9020897_9021381_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9020897 - 9021381
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATTCTTGTAACA
Flanking Amino Acid:
YQCNCLLGTSGVNCENNFDD
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
91.9
0.94
0.6
84.9
30
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
54.4
0.14
2
70.42
35.8

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016640
8988171 - 9054638
66468
ENSAPLT00000030944
8990224 - 9025789
35566
ENSAPLT00000024024
8987266 - 9054638
67373