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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9021493_9023135_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9021493 - 9023135
Intron Length:
1643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TACTGCTTAATA
Flanking Amino Acid:
YNCACKPGYTGPRCNVDIDE
Intron Amino Acid Position:
621

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
80
0.75
1
78.6
31
Major PPT
81.2
0.7
0.9
73.5
41.9
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
65.6
0.48
1.8
72.14
40.4

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016640
8988171 - 9054638
66468
ENSAPLT00000030944
8990224 - 9025789
35566
ENSAPLT00000024024
8987266 - 9054638
67373