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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9023314_9024436_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9023314 - 9024436
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAC|GCACATCGT
5'SS Class:
weak_major
3'SS Sequence:
CCAACTGTATGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
GAGTTCCCAACT
Flanking Amino Acid:
LSNPCVHGNCTDSSVYKCVC
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
2
58.8
45.1
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
45.6
-0.2
1.7
50.5
42.4
Minor 5ss
25.3
-2.8
4.1
39
40.1
Minor BPS
48.9
-0
1.9
66.97
43.2

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024024
8987266 - 9054638
67373