Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9029789_9032209_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9029789 - 9032209

Intron Length:

2421

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAACT

5'SS Class:

strong_major

3'SS Sequence:

CTTGCTCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

ATGACCTTATTA

Flanking Amino Acid:

CENNIDECTESSCFNGGTCV

Intron Amino Acid Position:

930

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.92

0.8

83.3

27.9

Major BPS

73.9

0.59

30.2

Major PPT

79.9

0.67

0.8

73.5

31.5

Minor 5ss

30.7

-2.2

2.9

41.1

44.9

Minor BPS

58.9

0.28

1.6

66.45

40.3

Associated Gene:

Gene:

NOTCH2

Ensembl Gene ID:

ENSAPLG00000015861

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024024

8987266 - 9054638

67373

ENSAPLT00000016640

8988171 - 9054638

66468