About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9032412_9035133_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9032412 - 9035133
Intron Length:
2722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACT
Flanking Amino Acid:
PLGYTGKNCQTPVDLCSRSP
Intron Amino Acid Position:
998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.5
32.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.5
0.75
0.8
77.6
30.7
Minor 5ss
27.5
-2.6
3.4
39.1
46.7
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024024
8987266 - 9054638
67373
ENSAPLT00000016640
8988171 - 9054638
66468