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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9044396_9044667_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9044396 - 9044667
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
CTTTCGCTAACT
Flanking Amino Acid:
KHRELEQEVIGTRVFLEIDN
Intron Amino Acid Position:
1589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
69.2
0.48
1
61
37.1
Major PPT
82.9
0.74
0.9
77.3
37
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
58.2
0.33
2.4
84.58
42.1

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024024
8987266 - 9054638
67373