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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9052426_9053294_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9052426 - 9053294
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTATGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
AAATACTTACTC
Flanking Amino Acid:
GANRDMQDNKEETPLFLAAR
Intron Amino Acid Position:
1934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
80.6
0.69
0.9
77
37.1
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
50.8
0
1.8
60.08
38.7

Associated Gene:

Gene:
NOTCH2
Ensembl Gene ID:
ENSAPLG00000015861
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024024
8987266 - 9054638
67373
ENSAPLT00000016640
8988171 - 9054638
66468