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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9060347_9065088_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9060347 - 9065088
Intron Length:
4742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
AGCGCCTGCTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACAGGAC
U12 Branch Point Sequence:
CGGACAGGACCT
Flanking Amino Acid:
PVWFGLQLQQTFAPWSKQCW
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
41.5
-0.5
1.2
31.1
32.3
Major PPT
44.5
-0.3
1.7
46.2
40.9
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
34.3
-1.1
2.2
47.32
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031083
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041467
9059838 - 9065124
5287