Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9064354_9064435_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9064354 - 9064435

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

CCTGTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCGTGAC

U12 Branch Point Sequence:

TCCCCGCTGAGC

Flanking Amino Acid:

MKRREETHHLANHTPHGSHT

Intron Amino Acid Position:

434

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

45.2

Major BPS

48.6

-0

1.2

40.4

Major PPT

0.5

0.8

65.4

30.4

Minor 5ss

29.9

-2.3

3.2

29.1

43.5

Minor BPS

38.4

-0.9

2.4

47.54

42.4

Associated Gene:

Gene:

HMGCS2

Ensembl Gene ID:

ENSAPLG00000016193

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025332

9061466 - 9068518

7053

ENSAPLT00000016900

9058935 - 9068159

9225