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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9075851_9077969_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9075851 - 9077969
Intron Length:
2119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTTAATTGA
5'SS Class:
weak_major
3'SS Sequence:
CACAAACACCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TATCTCTTCACA
Flanking Amino Acid:
GRLLPLRNSCFSPHRPLSPH
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.5
0.06
1.3
53.7
39.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
51.5
0.03
1
40
37.8
Minor 5ss
38.2
-1.3
2.9
51.4
45.1
Minor BPS
62.3
0.38
1.7
73.71
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024527
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027748
9075504 - 9078000
2497