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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9080549_9082016_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9080549 - 9082016
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TTTTCGTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAG
U12 Branch Point Sequence:
ATAGGCAAAACA
Flanking Amino Acid:
KIQQLEATNQLFQEKLNELN
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
53
0.08
1.6
52
43.5
Major PPT
81.3
0.7
0.9
76.8
37.3
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
42
-0.6
2.2
55.31
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016209
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016932
9080420 - 9089971
9552