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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9082470_9082579_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9082470 - 9082579
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTCCTCTCGACA
Flanking Amino Acid:
LHRSQLGQLQMSETPPSSQE
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
75.5
0.63
1
66
40.9
Major PPT
75.6
0.58
0.9
72.3
32.5
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
56.4
0.19
1.6
67.77
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016209
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016932
9080420 - 9089971
9552