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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9082796_9083257_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9082796 - 9083257
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAG
U12 Branch Point Sequence:
GAGGGCTGAATG
Flanking Amino Acid:
QKEATWKHNQELRAVVQQLQ
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
57.3
0.18
1.6
57.1
49.4
Major PPT
88.7
0.87
0.6
84.7
22.9
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
43
-0.6
1.9
41.88
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016209
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016932
9080420 - 9089971
9552