Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9083872_9084087_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9083872 - 9084087

Intron Length:

216

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCACA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCACCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

TCCCTCTTCATT

Flanking Amino Acid:

RVSDRDAALERAVDEKFSAL

Intron Amino Acid Position:

278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

76.7

33.9

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

70.8

0.47

0.8

63.1

32.9

Minor 5ss

34.2

-1.8

2.8

40.7

45.3

Minor BPS

52.6

0.16

1.8

68.07

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016209

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016932

9080420 - 9089971

9552