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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9084226_9084487_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9084226 - 9084487
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAG
U12 Branch Point Sequence:
CCTGCTTGAGCT
Flanking Amino Acid:
VLSSNEATIHSLESLLKAKT
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
74.9
35.3
Major BPS
46.9
-0.1
1.7
45
47.8
Major PPT
82.3
0.73
0.7
80.7
24.6
Minor 5ss
31.3
-2.1
3.2
40.8
38.7
Minor BPS
48
-0
1.8
63.99
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016209
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016932
9080420 - 9089971
9552