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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9084668_9084935_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9084668 - 9084935
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TGTCTCTCCATC
Flanking Amino Acid:
CLHDRNKEVEELTATLLCKL
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.1
39.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
77.6
0.62
0.9
75.9
38
Minor 5ss
27.9
-2.5
3.2
39.3
46.1
Minor BPS
47
-0.2
1.9
60.41
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016209
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016932
9080420 - 9089971
9552