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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9087797_9087974_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9087797 - 9087974
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
CTTCTGTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GCTTTTTGAAGG
Flanking Amino Acid:
LMAKKERESRRELAALQSVV
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.7
45
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.7
0.56
0.8
73.1
31.8
Minor 5ss
37.4
-1.4
3
38.2
46.7
Minor BPS
47.8
-0.3
1.8
51.88
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016209
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016932
9080420 - 9089971
9552