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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9088092_9088635_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9088092 - 9088635
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCCCCCCTGATC
Flanking Amino Acid:
TIQIKEDLIKDLQMQLVDPE
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.1
24.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
83.4
0.75
0.9
80.2
37.3
Minor 5ss
31.8
-2.1
3
37.8
47
Minor BPS
49.9
-0
1.7
59.74
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016209
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016932
9080420 - 9089971
9552