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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9108110_9112319_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9108110 - 9112319
Intron Length:
4210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
TCCCTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAC
U12 Branch Point Sequence:
GTGCCCACACAC
Flanking Amino Acid:
IKHKKEEMAKRYVASRRHTI
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.8
40.9
Major BPS
49.1
-0
0.9
56.3
29.4
Major PPT
71.1
0.47
0.8
64.8
30.8
Minor 5ss
33.7
-1.9
3.1
45.2
42.3
Minor BPS
39.3
-0.8
2
47.62
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030988
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020233
9107376 - 9114490
7115