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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_9110176_9110840_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9110176 - 9110840
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGAGAC
U12 Branch Point Sequence:
TGGCGCTGAGAC
Flanking Amino Acid:
GDIGGLWRFQEQPEEGRASI
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
46.7
-0.2
1.2
41.8
39.2
Major PPT
64.4
0.32
0.9
56.9
33.5
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
39.9
-0.7
2
47.19
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016309
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017028
9108982 - 9110975
1994